- a -

• averageVelocity() : RelativeThermostat.cpp

- c -

• constructOutputPath() : SimulationParams.cpp
• convertToOutputFormat() : OutputFormats.cpp , OutputFormats.h
• convertToPath() : XMLFileReader.cpp
• createDirectory() : Logger.cpp

- d -

• displayed_width() : ProgressBarInterceptor.cpp

- f -

• format_mup_s() : FormatTime.cpp , FormatTime.h
• format_seconds_eta() : FormatTime.cpp , FormatTime.h
• format_seconds_total() : FormatTime.cpp , FormatTime.h

- g -

• get_integration_functor() : IntegrationMethods.cpp , IntegrationMethods.h
• get_supported_input_file_extensions() : InputFormats.cpp , InputFormats.h
• get_supported_output_formats() : OutputFormats.cpp , OutputFormats.h
• get_supported_pairwise_forces() : ForcePicker.cpp , ForcePicker.h
• get_supported_simple_forces() : ForcePicker.cpp , ForcePicker.h

- l -

• loadCheckpointFile() : XMLFileReader.cpp
• loadConfig() : XMLFileReader.cpp
• loadLatestValidCheckpointFromFolder() : XMLFileReader.cpp

- m -

• main() : MolSim.cpp
• maxwellBoltzmannDistributedVelocity() : MaxwellBoltzmannDistribution.cpp , MaxwellBoltzmannDistribution.h
• merge_parameters() : CLIParser.cpp , CLIParser.h

- o -

• operator*() : ArrayUtils.h
• operator+() : ArrayUtils.h
• operator-() : ArrayUtils.h
• operator<<() : Particle.cpp , Particle.h , PairwiseForceSource.h , SimpleForceSource.h , TargettedForceSource.h , ArrayUtils.h
• operator==() : ArrayUtils.h

- p -

• parse_arguments() : CLIParser.cpp , CLIParser.h
• prepareParticles() : XMLFileReader.cpp
• printProgress() : ProgressBarInterceptor.cpp

- s -

• sanitizePath() : XMLFileReader.cpp
• split() : StringUtils.cpp , StringUtils.h
• summarizeMetadata() : ChkptPointFileReader.cpp

- t -

• trim() : XMLFileReader.cpp

- w -

• write_csv_element() : CSVWriter.cpp , CSVWriter.h
• write_csv_element< std::string >() : CSVWriter.cpp , CSVWriter.h